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Publications

Featured publications

  • A wall-time minimizing parallelization strategy for approximate Bayesian computation.

    PloS one

    Authors: Emad Alamoudi, Felipe Reck, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer, Yannik Schälte

  • Spectral Analysis of Human Retinal Pigment Epithelium Cells in Healthy and AMD Eyes.

    Investigative ophthalmology & visual science

    Authors: Leonie Bourauel, Marc Vaisband, Leon von der Emde, Katharina Bermond, Ioana Sandra Tarau, Rainer Heintzmann, Frank G Holz, Christine A Curcio, Jan Hasenauer, Thomas Ach

  • pyPESTO: A modular and scalable tool for parameter estimation for dynamic models.

    Bioinformatics (Oxford, England)

    Authors: Yannik Schälte, Fabian Fröhlich, Paul J Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina Lakrisenko, Dantong Wang, Elba Raimúndez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer

  • FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes.

    Bioinformatics (Oxford, England)

    Authors: Emad Alamoudi, Yannik Schälte, Robert Müller, Jörn Starruß, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer

  • Modeling early treatment response in AML from cell-free tumor DNA.

    iScience

    Authors: Dantong Wang, Christian Rausch, Simon A Buerger, Sebastian Tschuri, Maja Rothenberg-Thurley, Melanie Schulz, Jan Hasenauer, Frank Ziemann, Klaus H Metzeler, Carsten Marr

  • Retest variability and patient reliability indices of quantitative fundus autofluorescence in age-related macular degeneration: a MACUSTAR study report.

    Scientific reports

    Authors: Leon von der Emde, Merten Mallwitz, Marc Vaisband, Jan Hasenauer, Marlene Saßmannshausen, Jan Henrik Terheyden, Kenneth R Sloan, Steffen Schmitz-Valckenberg, Robert P Finger, Frank G Holz, Thomas Ach

  • Posterior marginalization accelerates Bayesian inference for dynamical models of biological processes.

    iScience

    Authors: Elba Raimúndez, Michael Fedders, Jan Hasenauer

  • Accessibility of covariance information creates vulnerability in Federated Learning frameworks.

    Bioinformatics (Oxford, England)

    Authors: Manuel Huth, Jonas Arruda, Roy Gusinow, Lorenzo Contento, Evelina Tacconelli, Jan Hasenauer

  • How European Research Projects Can Support Vaccination Strategies: The Case of the ORCHESTRA Project for SARS-CoV-2.

    Vaccines

    Authors: Anna Maria Azzini, Lorenzo Maria Canziani, Ruth Joanna Davis, Massimo Mirandola, Michael Hoelscher, Laurence Meyer, Cédric Laouénan, Maddalena Giannella, Jesús Rodríguez-Baño, Paolo Boffetta, Dana Mates, Surbhi Malhotra-Kumar, Gabriella Scipione, Caroline Stellmach, Eugenia Rinaldi, Jan Hasenauer, Evelina Tacconelli

  • Cox proportional hazards deep neural network identifies peripheral blood complete remission to be at least equivalent to morphologic complete remission in predicting outcomes of patients treated with azacitidine-A prospective cohort study by the AGMT.

    American journal of hematology

    Authors: Lisa Pleyer, Marc Vaisband, Manuel Drost, Michael Pfeilstöcker, Reinhard Stauder, Sonja Heibl, Heinz Sill, Michael Girschikofsky, Margarete Stampfl-Mattersberger, Angelika Pichler, Bernd Hartmann, Andreas Petzer, Martin Schreder, Clemens A Schmitt, Sonia Vallet, Thomas Melchardt, Armin Zebisch, Petra Pichler, Nadja Zaborsky, Sigrid Machherndl-Spandl, Dominik Wolf, Felix Keil, Jan Hasenauer, Julian Larcher-Senn, Richard Greil