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Publications

featured publications

  • PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems.

    Bioinformatics (Oxford, England)

    Authors: Paul J Jost, Frank T Bergmann, Daniel Weindl, Jan Hasenauer

  • Latent transition analysis for longitudinal studies of post-acute infection syndromes.

    Nature communications

    Authors: Roy Gusinow, Anna Górska, Lorenzo Maria Canziani, Iris Lopes-Rafegas, Carolina Alvarez Garavito, Adriana Tami, Elisa Gentilotti, Elisa Sicuri, Cédric Laouénan, Jade Ghosn, Aline-Marie Florence, Nadhem Lahfej, Fulvia Mazzaferri, Lidia Del Piccolo, Maddalena Giannella, Alice Toschi, Michela Di Chiara, Maria Giulia Caponcello, Zaira R Palacios-Baena, Karin I Wold, Elisa Rossi, Evelina Tacconelli, Jan Hasenauer

  • Near-Infrared Fluorescence Lifetime Imaging Microscopy Reveals Loss of RPE Cell Body Polarity in Age-Related Macular Degeneration.

    Investigative ophthalmology & visual science

    Authors: Katharina Wall, Sebastian Fritsch, Marc Vaisband, Jan Hasenauer, Niko Schwenzer, Leon von der Emde, Anna Sophia Jauch, Frank G Holz, Christine A Curcio, Thomas Ach

  • Simulation-based inference of cell migration dynamics in complex spatial environments.

    NPJ systems biology and applications

    Authors: Jonas Arruda, Emad Alamoudi, Robert Mueller, Marc Vaisband, Ronja Molkenbur, Jack Merrin, Eva Kiermaier, Jan Hasenauer

  • Cholesterol-lowering effects of oats induced by microbially produced phenolic metabolites in metabolic syndrome: a randomized controlled trial.

    Nature communications

    Authors: Linda Klümpen, Aakash Mantri, Maren Philipps, Waldemar Seel, Laura Schlautmann, Mohamed H Yaghmour, Verena Wiemann, Birgit Stoffel-Wagner, Martin Coenen, Leonie Weinhold, Jan Hasenauer, Thomas Fließwasser, Sven Burgdorf, Christoph Thiele, Peter Stehle, Marie-Christine Simon

  • Persistent Low-Grade Inflammation and Post-COVID Condition: Evidence from the ORCHESTRA Cohort.

    Biomedicines

    Authors: Elisa Gentilotti, Carolina Alvarez Garavito, Anna Górska, Roy Gusinow, Lorenzo Maria Canziani, Pasquale De Nardo, Alessandro Visentin, Maria Giulia Caponcello, Michela Di Chiara, Aline-Marie Florence, Gerolf de Boer, Salvatore Cataudella, The Orchestra Study Group, Gabriel Levy Hara, Adriana Tami, Maddalena Giannella, Cédric Laouénan, Jan Hasenauer, Jesús Rodríguez-Baño, Evelina Tacconelli

  • C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.

    Nature methods

    Authors: Daniel T Haas, Daniel Weindl, Pamela Kakimoto, Eva-Maria Trautmann, Julia P Schessner, Xia Mao, Mathias J Gerl, Maximilian Gerwien, Timo D Müller, Christian Klose, Xiping Cheng, Jan Hasenauer, Natalie Krahmer

  • Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using R.

    Bioinformatics advances

    Authors: Stephan Grein, Tabea Elschner, Ronja Kardinal, Johanna Bruder, Akim Strohmeyer, Karthikeyan Gunasekaran, Jennifer Witt, Hildigunnur Hermannsdóttir, Janina Behrens, Mueez U-Din, Jiangyan Yu, Gerhard Heldmaier, Renate Schreiber, Jan Rozman, Markus Heine, Ludger Scheja, Anna Worthmann, Joerg Heeren, Dagmar Wachten, Kerstin Wilhelm-Jüngling, Alexander Pfeifer, Jan Hasenauer, Martin Klingenspor

  • Continuous Circulation of Hepatitis E and A Viruses During COVID-19 Pandemic Lockdowns in Munich, Germany-Experience from Three Years of Wastewater Surveillance.

    Microorganisms

    Authors: Jasmin Javanmardi, Mathias Schemmerer, Karina Wallrafen-Sam, Jessica Neusser, Raquel Rubio-Acero, Michael Hoelscher, Thomas Kletke, Bernhard Boehm, Michael Schneider, Elisabeth Waldeck, Martin Hoch, Merle M Böhmer, Christof Geldmacher, Jan Hasenauer, Jürgen J Wenzel, Andreas Wieser

  • A dynamic model for Waddington's landscape accounting for cell-to-cell communication.

    Mathematical biosciences

    Authors: Simon Merkt, Lara Fuhrmann, Erika Dudkin, Andreas Schlitzer, Barbara Niethammer, Jan Hasenauer