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featured publications

  • C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.

    Nature methods

    Authors: Daniel T Haas, Daniel Weindl, Pamela Kakimoto, Eva-Maria Trautmann, Julia P Schessner, Xia Mao, Mathias J Gerl, Maximilian Gerwien, Timo D Müller, Christian Klose, Xiping Cheng, Jan Hasenauer, Natalie Krahmer

  • Continuous Circulation of Hepatitis E and A Viruses During COVID-19 Pandemic Lockdowns in Munich, Germany-Experience from Three Years of Wastewater Surveillance.

    Microorganisms

    Authors: Jasmin Javanmardi, Mathias Schemmerer, Karina Wallrafen-Sam, Jessica Neusser, Raquel Rubio-Acero, Michael Hoelscher, Thomas Kletke, Bernhard Boehm, Michael Schneider, Elisabeth Waldeck, Martin Hoch, Merle M Böhmer, Christof Geldmacher, Jan Hasenauer, Jürgen J Wenzel, Andreas Wieser

  • A dynamic model for Waddington's landscape accounting for cell-to-cell communication.

    Mathematical biosciences

    Authors: Simon Merkt, Lara Fuhrmann, Erika Dudkin, Andreas Schlitzer, Barbara Niethammer, Jan Hasenauer

  • PEtab.jl: Advancing the Efficiency and Utility of Dynamic Modelling.

    Bioinformatics (Oxford, England)

    Authors: Sebastian Persson, Fabian Fröhlich, Stephan Grein, Torkel Loman, Damiano Ognissanti, Viktor Hasselgren, Jan Hasenauer, Marija Cvijovic

  • Current state and open problems in universal differential equations for systems biology.

    NPJ systems biology and applications

    Authors: Maren Philipps, Nina Schmid, Jan Hasenauer

  • Assessment of uncertainty quantification in universal differential equations.

    Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

    Authors: Nina Schmid, David Fernandes Del Pozo, Willem Waegeman, Jan Hasenauer

  • DataSHIELD: mitigating disclosure risk in a multi-site federated analysis platform.

    Bioinformatics advances

    Authors: Demetris Avraam, Rebecca C Wilson, Noemi Aguirre Chan, Soumya Banerjee, Tom R P Bishop, Olly Butters, Tim Cadman, Luise Cederkvist, Liesbeth Duijts, Xavier Escribà Montagut, Hugh Garner, Gonçalo Gonçalves, Juan R González, Sido Haakma, Mette Hartlev, Jan Hasenauer, Manuel Huth, Eleanor Hyde, Vincent W V Jaddoe, Yannick Marcon, Michaela Th Mayrhofer, Fruzsina Molnar-Gabor, Andrei Scott Morgan, Madeleine Murtagh, Marc Nestor, Anne-Marie Nybo Andersen, Simon Parker, Angela Pinot de Moira, Florian Schwarz, Katrine Strandberg-Larsen, Morris A Swertz, Marieke Welten, Stuart Wheater, Paul Burton

  • Loss formulations for assumption-free neural inference of SDE coefficient functions.

    NPJ systems biology and applications

    Authors: Marc Vaisband, Valentin von Bornhaupt, Nina Schmid, Izdar Abulizi, Jan Hasenauer

  • Effects of time-of-day on the noradrenaline, adrenaline, cortisol and blood lipidome response to an ice bath.

    Scientific reports

    Authors: Alexander Braunsperger, Maximilian Bauer, Chaima Ben Brahim, Lea Seep, Dominik Tischer, Mirko Peitzsch, Jan Hasenauer, Sieglinde Hechenbichler Figueroa, Anna Worthmann, Joerg Heeren, Kenneth A Dyar, Karsten Koehler, Ana Soriano-Arroquia, Martin Schönfelder, Henning Wackerhage

  • Benchmarking methods for computing local sensitivities in ordinary differential equation models at dynamic and steady states.

    PloS one

    Authors: Polina Lakrisenko, Dilan Pathirana, Daniel Weindl, Jan Hasenauer