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  • PEtab Select: Specification standard and supporting software for automated model selection.

    PLoS computational biology

    Authors: Dilan Pathirana, Frank T Bergmann, Domagoj Doresic, Polina Lakrisenko, Sebastian Persson, Niklas Neubrand, Jens Timmer, Clemens Kreutz, Harald Binder, Marija Cvijovic, Daniel Weindl, Jan Hasenauer

  • Adipose ILC2s depend on acetyl-CoA carboxylase 1 to maintain metabolic health.

    Cell metabolism

    Authors: Fotios Karagiannis, Maria Rafailia Theodorou, Fabian Nikolka, Maria Doverman, Dhruvi Shah, Chantal Wientjens, Timothy R McCulloch, Ronja Kardinal, David Colon, Jelena Zurkovic, Jiangyan Yu, Julia Anna Noras, Patricia Weiss, Roman Rombo, Tim Sparwasser, Zeinab Abdullah, Felix Meissner, Christoph Thiele, Jan Hasenauer, Dagmar Wachten, Karsten Hiller, Christoph Wilhelm

  • Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's C.

    Mathematical biosciences

    Authors: Jakob Vanhoefer, Antonia Korner, Domagoj Doresic, Jan Hasenauer, Dilan Pathirana

  • MEmilio: a high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics.

    Scientific reports

    Authors: Julia Bicker, Carlotta Gerstein, David Kerkmann, Sascha Korf, René Schmieding, Anna Wendler, Henrik Zunker, Daniel Abele, Maximilian Betz, Khoa Nguyen, Lena Plötzke, Kilian Volmer, Agatha Schmidt, Nils Waßmuth, Patrick Lenz, Daniel Richter, Hannah Tritzschak, Ralf Hannemann-Tamas, Julian Litz, Paul Johannssen, Marielena Borges, Annika Jungklaus, Manuel Heger, Annalena Lange, Elisabeth Kluth, Kathrin Rack, Vincent Wieland, Jonas Arruda, Sebastian C Binder, Margrit Klitz, Martin Siggel, Manuel Dahmen, Achim Basermann, Michael Meyer-Hermann, Jan Hasenauer, Martin J Kühn

  • Fluorescence lifetime imaging microscopy of pigmented cells in neovascular age-related macular degeneration.

    Experimental eye research

    Authors: Sebastian Fritsch, Katharina Wall, Marc Vaisband, Jan Hasenauer, Niko Schwenzer, Anna S Jauch, Frank G Holz, Christine A Curcio, Thomas Ach

  • The parameter estimation tables (PEtab) format version 2.

    Journal of integrative bioinformatics

    Authors: Dilan Pathirana, Fabian Fröhlich, Sebastian Persson, Frank T Bergmann, Matthias König, Paul F Lang, Severin Bang, Svenja Kemmer, Jan Hasenauer, Daniel Weindl

  • Using Latent Representations to Link Disjoint Longitudinal Data for Mixed-Effects Regression.

    Statistics in medicine

    Authors: Clemens Schächter, Maren Hackenberg, Michelle Pfaffenlehner, Félix B Tambe-Ndonfack, Thorsten Schmidt, Astrid Pechmann, Janbernd Kirschner, Jan Hasenauer, Harald Binder

  • Quantitative modelling of P-TEFb mediated CTD phosphorylation identifies local cooperativity.

    PLoS computational biology

    Authors: Aaron Callenbach, Domagoj Dorešić, Robert Düster, Vanessa Nakonecnij, Erika Dudkin, Matthias Geyer, Jan Hasenauer

  • Coupled epidemiological and wastewater modeling at the urban scale: A case study for Munich.

    iScience

    Authors: Julia Bicker, Natalie Tomza, Karina Wallrafen-Sam, Nina Schmid, Andreas F Hofmann, Sascha Korf, Alain Schengen, Jasmin Javanmardi, Andreas Wieser, Martin J Kühn, Jan Hasenauer

  • Assessment of simulation-based inference methods for stochastic compartmental models in epidemiological research.

    PloS one

    Authors: Vincent Wieland, Nils Waßmuth, Lorenzo Contento, Martin Kühn, Jan Hasenauer