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featured publications

  • Next-generation discovery: empowering organoid research with machine learning, artificial intelligence, and mathematical modeling.

    Trends in biotechnology

    Authors: Sneha Pushpa Ramesan, Jasmitha Boovadira Poonacha, Dilan Pathirana, Simon Merkt, Christian Maass, Jan Hasenauer, Elena S Reckzeh

  • From brown to white: Brown adipose tissue endothelial cells whiten in culture conditions.

    Molecular metabolism

    Authors: Tabea Elschner, Stephan Grein, Jana Sander, Staffan Hildebrand, Lara Heubach, Nina Pannwitz, Maria Mircea, Elba Raimundez, Vasiliki Karagiannakou, Anastasia Georgiadi, Joerg Heeren, Jan Hasenauer, Alexander Pfeifer, Kerstin Wilhelm-Jüngling

  • Endothelial ADGRF5(GPR116) governs vascular adaptation required for sustained thermogenic remodeling of brown adipose tissue.

    Molecular metabolism

    Authors: Rabih El-Merahbi, Vasiliki Karagiannakou, Ronja Kardinal, Lea Seep, Richard Lindner, Michelle Ynonne Jäckstein, Staffan Hildebrand, Mersiha Hasic, Eylül Korkmaz, Ankush Kumar Jha, Aspasia Thodou Krokidi, Kenneth Dyar, Felix Meissner, Stephan Grein, Jörg Heeren, Martin Klingenspor, Alexander Pfeifer, Jan Hasenauer, Dagmar Wachten, Stephan Herzig, Anastasia Georgiadi

  • PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems.

    Bioinformatics (Oxford, England)

    Authors: Paul J Jost, Frank T Bergmann, Daniel Weindl, Jan Hasenauer

  • Latent transition analysis for longitudinal studies of post-acute infection syndromes.

    Nature communications

    Authors: Roy Gusinow, Anna Górska, Lorenzo Maria Canziani, Iris Lopes-Rafegas, Carolina Alvarez Garavito, Adriana Tami, Elisa Gentilotti, Elisa Sicuri, Cédric Laouénan, Jade Ghosn, Aline-Marie Florence, Nadhem Lahfej, Fulvia Mazzaferri, Lidia Del Piccolo, Maddalena Giannella, Alice Toschi, Michela Di Chiara, Maria Giulia Caponcello, Zaira R Palacios-Baena, Karin I Wold, Elisa Rossi, Evelina Tacconelli, Jan Hasenauer

  • Near-Infrared Fluorescence Lifetime Imaging Microscopy Reveals Loss of RPE Cell Body Polarity in Age-Related Macular Degeneration.

    Investigative ophthalmology & visual science

    Authors: Katharina Wall, Sebastian Fritsch, Marc Vaisband, Jan Hasenauer, Niko Schwenzer, Leon von der Emde, Anna Sophia Jauch, Frank G Holz, Christine A Curcio, Thomas Ach

  • Simulation-based inference of cell migration dynamics in complex spatial environments.

    NPJ systems biology and applications

    Authors: Jonas Arruda, Emad Alamoudi, Robert Mueller, Marc Vaisband, Ronja Molkenbur, Jack Merrin, Eva Kiermaier, Jan Hasenauer

  • Cholesterol-lowering effects of oats induced by microbially produced phenolic metabolites in metabolic syndrome: a randomized controlled trial.

    Nature communications

    Authors: Linda Klümpen, Aakash Mantri, Maren Philipps, Waldemar Seel, Laura Schlautmann, Mohamed H Yaghmour, Verena Wiemann, Birgit Stoffel-Wagner, Martin Coenen, Leonie Weinhold, Jan Hasenauer, Thomas Fließwasser, Sven Burgdorf, Christoph Thiele, Peter Stehle, Marie-Christine Simon

  • Persistent Low-Grade Inflammation and Post-COVID Condition: Evidence from the ORCHESTRA Cohort.

    Biomedicines

    Authors: Elisa Gentilotti, Carolina Alvarez Garavito, Anna Górska, Roy Gusinow, Lorenzo Maria Canziani, Pasquale De Nardo, Alessandro Visentin, Maria Giulia Caponcello, Michela Di Chiara, Aline-Marie Florence, Gerolf de Boer, Salvatore Cataudella, The Orchestra Study Group, Gabriel Levy Hara, Adriana Tami, Maddalena Giannella, Cédric Laouénan, Jan Hasenauer, Jesús Rodríguez-Baño, Evelina Tacconelli

  • C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.

    Nature methods

    Authors: Daniel T Haas, Daniel Weindl, Pamela Kakimoto, Eva-Maria Trautmann, Julia P Schessner, Xia Mao, Mathias J Gerl, Maximilian Gerwien, Timo D Müller, Christian Klose, Xiping Cheng, Jan Hasenauer, Natalie Krahmer